Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02334.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1923
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:1448 original size:28 final size:30

Alignment explanation


    Indices: 1416--1474  Score: 93
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       1406 TGCAGATAGT

                         *         *      
       1416 AAAAAAGT-AGATTTAGAGATGCGTATGGA
          1 AAAAAAGTAAGATATAGAGATGCATATGGA

                                          
       1445 AAAAAAGTAAGATATAGAGATGCATATGGA
          1 AAAAAAGTAAGATATAGAGATGCATATGGA

       1475 TCAAAGTTTA


Statistics
Matches: 27,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  29    8  0.30
  30   19  0.70

ACGTcount: A:0.49, C:0.03, G:0.25, T:0.22


Consensus pattern (30 bp):   
AAAAAAGTAAGATATAGAGATGCATATGGA

Done.