Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02337.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3904
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:54 original size:9 final size:9

Alignment explanation


    Indices: 40--68  Score: 51
    Period size: 9  Copynumber: 3.3  Consensus size: 9

         30 TTACTCTTGC

                     
         40 AAAAAAACA
          1 AAAAAAACA

                     
         49 AAAAAAACA
          1 AAAAAAACA

                     
         58 AAAAAAA-A
          1 AAAAAAACA

               
         66 AAA
          1 AAA

         69 GCTTCAAACA


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
   8    4  0.20
   9   16  0.80

ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00


Consensus pattern (9 bp):   
AAAAAAACA
Done.