Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02338.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2978
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:616 original size:15 final size:15

Alignment explanation


    Indices: 596--646  Score: 50
    Period size: 15  Copynumber: 3.4  Consensus size: 15

        586 ACCTGCCTGC

                           
        596 TTCACCTGGTTCTGT
          1 TTCACCTGGTTCTGT

                    *  *    
        611 TTCACCTCAG-CCTGT
          1 TTCACCT-GGTTCTGT

               *    *      
        626 TTCTCCTGCTTCTGT
          1 TTCACCTGGTTCTGT

                  
        641 TTCACC
          1 TTCACC

        647 CTATCATGGT


Statistics
Matches: 27,  Mismatches: 7, Indels: 4
        0.71            0.18        0.11

Matches are distributed among these distances:
  15   26  0.96
  16    1  0.04

ACGTcount: A:0.08, C:0.35, G:0.14, T:0.43


Consensus pattern (15 bp):   
TTCACCTGGTTCTGT

Found at i:624 original size:30 final size:30

Alignment explanation


    Indices: 590--646  Score: 87
    Period size: 30  Copynumber: 1.9  Consensus size: 30

        580 CAGAATACCT

                          *               
        590 GCCTGCTTCACCTGGTTCTGTTTCACCTCA
          1 GCCTGCTTCACCTGCTTCTGTTTCACCTCA

                 *   *                 
        620 GCCTGTTTCTCCTGCTTCTGTTTCACC
          1 GCCTGCTTCACCTGCTTCTGTTTCACC

        647 CTATCATGGT


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  30   24  1.00

ACGTcount: A:0.07, C:0.37, G:0.16, T:0.40


Consensus pattern (30 bp):   
GCCTGCTTCACCTGCTTCTGTTTCACCTCA
Done.