Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02346.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3150
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Found at i:2447 original size:69 final size:69

Alignment explanation


    Indices: 2364--2505  Score: 239
    Period size: 69  Copynumber: 2.1  Consensus size: 69

       2354 CTGTTCTAGA

                                **                                           
       2364 TGAAAGTACAAGTACTATGACTGATTCTCTAGTAGTGTTGGATGAGGATTCACCAACCATGGACG
          1 TGAAAGTACAAGTACTATGAAGGATTCTCTAGTAGTGTTGGATGAGGATTCACCAACCATGGACG

                
       2429 CAGT
         66 CAGT

                    *                        *                             * 
       2433 TGAAAGTAGAAGTACTATGAAGGATTCTCTAGTGGTGTTGGATGAGGATTCACCAACCATGGATG
          1 TGAAAGTACAAGTACTATGAAGGATTCTCTAGTAGTGTTGGATGAGGATTCACCAACCATGGACG

                
       2498 CAGT
         66 CAGT

                
       2502 TGAA
          1 TGAA

       2506 GTTGCCATTA


Statistics
Matches: 68,  Mismatches: 5, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  69   68  1.00

ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27


Consensus pattern (69 bp):   
TGAAAGTACAAGTACTATGAAGGATTCTCTAGTAGTGTTGGATGAGGATTCACCAACCATGGACG
CAGT
Done.