Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02372.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 774

Length: 1291
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29


Found at i:1212 original size:12 final size:12

Alignment explanation


    Indices: 1195--1220  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1185 CCTGTTCTAG

                        
       1195 TTCTTTTTTTTT
          1 TTCTTTTTTTTT

                        
       1207 TTCTTTTTTTTT
          1 TTCTTTTTTTTT

              
       1219 TT
          1 TT

       1221 TTGAAAAACA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92


Consensus pattern (12 bp):   
TTCTTTTTTTTT
Done.