Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02381.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2038
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34


Found at i:899 original size:13 final size:13

Alignment explanation


    Indices: 866--903  Score: 51
    Period size: 13  Copynumber: 2.9  Consensus size: 13

        856 TGGCATTGCT

                  *      
        866 TCTTTTCTTTTTC
          1 TCTTTTTTTTTTC

                         
        879 TCTTTTTTTTTTC
          1 TCTTTTTTTTTTC

                         
        892 T-TTATTTTTTTT
          1 TCTT-TTTTTTTT

        904 GCTATTGTTT


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  12    2  0.09
  13   21  0.91

ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84


Consensus pattern (13 bp):   
TCTTTTTTTTTTC
Done.