Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02393.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3065
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Found at i:1106 original size:144 final size:144

Alignment explanation


    Indices: 846--1126  Score: 526
    Period size: 144  Copynumber: 2.0  Consensus size: 144

        836 CACCTATTTG

                                                                             
        846 GTTTGAAGGTTCTAATGTCAAATATTACCCTTTGTCTGTAAAAACTCATTGTCAAGGGCTTTTTG
          1 GTTTGAAGGTTCTAATGTCAAATATTACCCTTTGTCTGTAAAAACTCATTGTCAAGGGCTTTTTG

                                                                 *           
        911 TTTAGCATTACACCATGTTACCGGAACAAGGGCCTGAAGTTTATTCTCATGAATGGTTAGCAATC
         66 TTTAGCATTACACCATGTTACCGGAACAAGGGCCTGAAGTTTATTCTCATGAAGGGTTAGCAATC

                          
        976 CTTTGGCCCGAACA
        131 CTTTGGCCCGAACA

                                         *             *                     
        990 GTTTGAAGGTTCTAATGTCAAATATTACCTTTTGTCTGTAAAAGCTCATTGTCAAGGGCTTTTTG
          1 GTTTGAAGGTTCTAATGTCAAATATTACCCTTTGTCTGTAAAAACTCATTGTCAAGGGCTTTTTG

                                       *                                     
       1055 TTTAGCATTACACCATGTTACCGGAACTAGGGCCTGAAGTTTATTCTCATGAAGGGTTAGCAATC
         66 TTTAGCATTACACCATGTTACCGGAACAAGGGCCTGAAGTTTATTCTCATGAAGGGTTAGCAATC

                   
       1120 CTTTGGC
        131 CTTTGGC

       1127 GTGAATAGTT


Statistics
Matches: 133,  Mismatches: 4, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 144  133  1.00

ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35


Consensus pattern (144 bp):   
GTTTGAAGGTTCTAATGTCAAATATTACCCTTTGTCTGTAAAAACTCATTGTCAAGGGCTTTTTG
TTTAGCATTACACCATGTTACCGGAACAAGGGCCTGAAGTTTATTCTCATGAAGGGTTAGCAATC
CTTTGGCCCGAACA

Found at i:2534 original size:34 final size:34

Alignment explanation


    Indices: 2491--2561  Score: 142
    Period size: 34  Copynumber: 2.1  Consensus size: 34

       2481 TTGACAAGCT

                                              
       2491 CTACTGTTATGTTGAATTTCTTCCCTAGTTTCTG
          1 CTACTGTTATGTTGAATTTCTTCCCTAGTTTCTG

                                              
       2525 CTACTGTTATGTTGAATTTCTTCCCTAGTTTCTG
          1 CTACTGTTATGTTGAATTTCTTCCCTAGTTTCTG

               
       2559 CTA
          1 CTA

       2562 ACTTTTCAAC


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   37  1.00

ACGTcount: A:0.15, C:0.21, G:0.14, T:0.49


Consensus pattern (34 bp):   
CTACTGTTATGTTGAATTTCTTCCCTAGTTTCTG
Done.