Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02411.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2088
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:1200 original size:24 final size:24

Alignment explanation


    Indices: 1173--1220  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1163 ATACTGAAGT

                                    
       1173 AAAATTTTAATTTGCTGATGCAAC
          1 AAAATTTTAATTTGCTGATGCAAC

                                    
       1197 AAAATTTTAATTTGCTGATGCAAC
          1 AAAATTTTAATTTGCTGATGCAAC

       1221 CACAAATTAC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38


Consensus pattern (24 bp):   
AAAATTTTAATTTGCTGATGCAAC
Done.