Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02416.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 261

Length: 435
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.21


Found at i:64 original size:6 final size:6

Alignment explanation


    Indices: 53--99  Score: 76
    Period size: 6  Copynumber: 7.8  Consensus size: 6

         43 ACCGCCGCTA

                                                   *   *          
         53 ACAAGG ACAAGG ACAAGG ACAAGG ACAAGG ACAAAG ATAAGG ACAAG
          1 ACAAGG ACAAGG ACAAGG ACAAGG ACAAGG ACAAGG ACAAGG ACAAG

        100 AAGCGCCCGG


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   6   37  1.00

ACGTcount: A:0.53, C:0.15, G:0.30, T:0.02


Consensus pattern (6 bp):   
ACAAGG

Done.