Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00362.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4604
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31


Found at i:531 original size:27 final size:27

Alignment explanation


    Indices: 433--536  Score: 122
    Period size: 27  Copynumber: 3.8  Consensus size: 27

        423 AAGCGTTCTG

                  *        *            
        433 GTGGCTATGCCACAAATATCTG-ATCTA
          1 GTGGCTCTGCCAC-ATTATCTGTATCTA

                                       *
        460 GTGGCTCTGCCACATATATCTGT-TCTG
          1 GTGGCTCTGCCACAT-TATCTGTATCTA

                                        
        487 GTGGCTCTGCCACGATTATCTGTATCTA
          1 GTGGCTCTGCCAC-ATTATCTGTATCTA

               *     *            
        515 GTGACTCTGTCACATTATCTGT
          1 GTGGCTCTGCCACATTATCTGT

        537 TCTGGCAGCC


Statistics
Matches: 67,  Mismatches: 6, Indels: 8
        0.83            0.07        0.10

Matches are distributed among these distances:
  26    1  0.01
  27   50  0.75
  28   16  0.24

ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36


Consensus pattern (27 bp):   
GTGGCTCTGCCACATTATCTGTATCTA

Found at i:534 original size:54 final size:54

Alignment explanation


    Indices: 427--541  Score: 169
    Period size: 54  Copynumber: 2.1  Consensus size: 54

        417 TGGAGGAAGC

                                                *                 
        427 GTTCTGGTGGCTATGCCACAAATATCTGATCTAGTGGCTCTGCCACATATATCT
          1 GTTCTGGTGGCTATGCCACAAATATCTGATCTAGTGACTCTGCCACATATATCT

                        *      * *                     *           
        481 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTAGTGACTCTGTCACAT-TATCT
          1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTAGTGACTCTGCCACATATATCT

                   
        535 GTTCTGG
          1 GTTCTGG

        542 CAGCCATACT


Statistics
Matches: 55,  Mismatches: 5, Indels: 2
        0.89            0.08        0.03

Matches are distributed among these distances:
  54   37  0.67
  55   18  0.33

ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37


Consensus pattern (54 bp):   
GTTCTGGTGGCTATGCCACAAATATCTGATCTAGTGACTCTGCCACATATATCT
Done.