Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02421.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7817
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36


Found at i:1114 original size:95 final size:95

Alignment explanation


    Indices: 951--1130  Score: 279
    Period size: 95  Copynumber: 1.9  Consensus size: 95

        941 TCCATATTTG

                      *          *     *                   *          *      
        951 GTTGCAATCATATTTCATCCCCTATAAGTTATCGTTCTTTCATTTTAGTCCTCCATTATTTGTTA
          1 GTTGCAATCACATTTCATCCCATATAAATTATCGTTCTTTCATTTTAATCCTCCATTAGTTGTTA

                                          
       1016 TTTAAGTTATTACATATATACCCTCCATTA
         66 TTTAAGTTATTACATATATACCCTCCATTA

                              *                                   *          
       1046 GTTGCAATCACATTTCATGCCATATAAATTATCGTTCTTTCATTTTAATCCTCCTTTAGTTGTTA
          1 GTTGCAATCACATTTCATCCCATATAAATTATCGTTCTTTCATTTTAATCCTCCATTAGTTGTTA

                    *      *    
       1111 TTTAAGTTGTTACATGTATA
         66 TTTAAGTTATTACATATATA

       1131 TATATTTGCT


Statistics
Matches: 76,  Mismatches: 9, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  95   76  1.00

ACGTcount: A:0.26, C:0.19, G:0.09, T:0.47


Consensus pattern (95 bp):   
GTTGCAATCACATTTCATCCCATATAAATTATCGTTCTTTCATTTTAATCCTCCATTAGTTGTTA
TTTAAGTTATTACATATATACCCTCCATTA

Found at i:6328 original size:3 final size:3

Alignment explanation


    Indices: 6313--6367  Score: 101
    Period size: 3  Copynumber: 18.3  Consensus size: 3

       6303 ATAAAGATGC

                    *                                                      
       6313 TAT TAT GAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
          1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT

                     
       6361 TAT TAT T
          1 TAT TAT T

       6368 TAGAATGAAG


Statistics
Matches: 50,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   3   50  1.00

ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65


Consensus pattern (3 bp):   
TAT

Found at i:6482 original size:5 final size:5

Alignment explanation


    Indices: 6472--6501  Score: 60
    Period size: 5  Copynumber: 6.0  Consensus size: 5

       6462 AGCAGAAGGT

                                               
       6472 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
          1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG

       6502 CATAATAAAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   25  1.00

ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00


Consensus pattern (5 bp):   
AAAAG

Done.