Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02449.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3083
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39


Found at i:449 original size:23 final size:23

Alignment explanation


    Indices: 423--469  Score: 78
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        413 TTGGTTGATA

                                    
        423 TAATTTTCAGGA-AGTTGTTTCTT
          1 TAATTTTCA-GATAGTTGTTTCTT

                                   
        446 TAATTTTCAGATAGTTGTTTCTT
          1 TAATTTTCAGATAGTTGTTTCTT

             
        469 T
          1 T

        470 TCTTTCTCTG


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  22    2  0.09
  23   21  0.91

ACGTcount: A:0.21, C:0.09, G:0.15, T:0.55


Consensus pattern (23 bp):   
TAATTTTCAGATAGTTGTTTCTT

Found at i:3015 original size:12 final size:12

Alignment explanation


    Indices: 2998--3025  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

       2988 AATTTAAATG

                        
       2998 TATTAAATTACA
          1 TATTAAATTACA

                        
       3010 TATTAAATTACA
          1 TATTAAATTACA

                
       3022 TATT
          1 TATT

       3026 GAATCAATGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46


Consensus pattern (12 bp):   
TATTAAATTACA
Done.