Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02460.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1917
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30


Found at i:599 original size:15 final size:15

Alignment explanation


    Indices: 579--609  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        569 TATTTGGACG

                           
        579 TAGTGGCACTACCAC
          1 TAGTGGCACTACCAC

                           
        594 TAGTGGCACTACCAC
          1 TAGTGGCACTACCAC

             
        609 T
          1 T

        610 TCATCATCAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23


Consensus pattern (15 bp):   
TAGTGGCACTACCAC
Done.