Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02471.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3004
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:92 original size:7 final size:7

Alignment explanation


    Indices: 80--111  Score: 64
    Period size: 7  Copynumber: 4.6  Consensus size: 7

         70 GCTCTCCTTA

                   
         80 ACTCAGT
          1 ACTCAGT

                   
         87 ACTCAGT
          1 ACTCAGT

                   
         94 ACTCAGT
          1 ACTCAGT

                   
        101 ACTCAGT
          1 ACTCAGT

                
        108 ACTC
          1 ACTC

        112 CGACTTTTGA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   25  1.00

ACGTcount: A:0.28, C:0.31, G:0.12, T:0.28


Consensus pattern (7 bp):   
ACTCAGT

Done.