Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02476.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3347
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:1925 original size:328 final size:328

Alignment explanation


    Indices: 1327--1982  Score: 1231
    Period size: 328  Copynumber: 2.0  Consensus size: 328

       1317 TTAGTCGAAA

                                                                      *      
       1327 GGGTCAAAACATCTGTGGGTAACATGGTTGAGTATTCTATTGCAAATTTTTATTCTCTTAATACT
          1 GGGTCAAAACATCTGTGGGTAACATGGTTGAGTATTCTATTGCAAATTTTTATTCTCTGAATACT

                            *              *                                 
       1392 AATGTGACAAAATTGTGATAGTTCAAGGCCACAATCTGTTTTCAAACTCTTAAATTAAATGAGAA
         66 AATGTGACAAAATTGTCATAGTTCAAGGCCAAAATCTGTTTTCAAACTCTTAAATTAAATGAGAA

                                                  *                          
       1457 CCATGCAGCAAACAATCATATTGTGTTATGTACGGACCCTATTGTGGTGTTTTGACTGTTATTGA
        131 CCATGCAGCAAACAATCATATTGTGTTATGTACGGACCATATTGTGGTGTTTTGACTGTTATTGA

                                                                             
       1522 AAATTTGTTGCTAATAAACAATCATATAAGATGTAAAATGAATAGTAGATTTCATTGTTGTTTGA
        196 AAATTTGTTGCTAATAAACAATCATATAAGATGTAAAATGAATAGTAGATTTCATTGTTGTTTGA

               *                                                             
       1587 AAGTAATGTGACCATAAAGTCTTCTGATTAAACAGGACCCGGAACAAAAAAGTGCATGCTAGTAC
        261 AAGGAATGTGACCATAAAGTCTTCTGATTAAACAGGACCCGGAACAAAAAAGTGCATGCTAGTAC

               
       1652 TAG
        326 TAG

                                                                             
       1655 GGGTCAAAACATCTGTGGGTAACATGGTTGAGTATTCTATTGCAAATTTTTATTCTCTGAATACT
          1 GGGTCAAAACATCTGTGGGTAACATGGTTGAGTATTCTATTGCAAATTTTTATTCTCTGAATACT

                                                      *                      
       1720 AATGTGACAAAATTGTCATAGTTCAAGGCCAAAATCTGTTTTTAAACTCTTAAATTAAATGAGAA
         66 AATGTGACAAAATTGTCATAGTTCAAGGCCAAAATCTGTTTTCAAACTCTTAAATTAAATGAGAA

                                                                             
       1785 CCATGCAGCAAACAATCATATTGTGTTATGTACGGACCATATTGTGGTGTTTTGACTGTTATTGA
        131 CCATGCAGCAAACAATCATATTGTGTTATGTACGGACCATATTGTGGTGTTTTGACTGTTATTGA

                                   *                                         
       1850 AAATTTGTTGCTAATAAACAATCGTATAAGATGTAAAATGAATAGTAGATTTCATTGTTGTTTGA
        196 AAATTTGTTGCTAATAAACAATCATATAAGATGTAAAATGAATAGTAGATTTCATTGTTGTTTGA

                            *                          *                     
       1915 AAGGAATGTGACCATACAGTCTTCTGATTAAACAGGACCCGGAGCAAAAAAGTGCATGCTAGTAC
        261 AAGGAATGTGACCATAAAGTCTTCTGATTAAACAGGACCCGGAACAAAAAAGTGCATGCTAGTAC

               
       1980 TAG
        326 TAG

       1983 TCTCGCTCCA


Statistics
Matches: 319,  Mismatches: 9, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 328  319  1.00

ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33


Consensus pattern (328 bp):   
GGGTCAAAACATCTGTGGGTAACATGGTTGAGTATTCTATTGCAAATTTTTATTCTCTGAATACT
AATGTGACAAAATTGTCATAGTTCAAGGCCAAAATCTGTTTTCAAACTCTTAAATTAAATGAGAA
CCATGCAGCAAACAATCATATTGTGTTATGTACGGACCATATTGTGGTGTTTTGACTGTTATTGA
AAATTTGTTGCTAATAAACAATCATATAAGATGTAAAATGAATAGTAGATTTCATTGTTGTTTGA
AAGGAATGTGACCATAAAGTCTTCTGATTAAACAGGACCCGGAACAAAAAAGTGCATGCTAGTAC
TAG
Done.