Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02479.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2093
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25


Found at i:577 original size:6 final size:6

Alignment explanation


    Indices: 555--593  Score: 51
    Period size: 6  Copynumber: 6.5  Consensus size: 6

        545 GTGGCGGTGG

                 *     *                  *              
        555 AGGAGG AGGAAA AGGAGA AGGAGA AGCAGA AGGAGA AGG
          1 AGGAGA AGGAGA AGGAGA AGGAGA AGGAGA AGGAGA AGG

        594 CTGTTGTTTG


Statistics
Matches: 28,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.49, C:0.03, G:0.49, T:0.00


Consensus pattern (6 bp):   
AGGAGA
Done.