Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02492.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4852
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31


Found at i:2121 original size:114 final size:114

Alignment explanation


    Indices: 1920--2154  Score: 364
    Period size: 114  Copynumber: 2.1  Consensus size: 114

       1910 GCTAGAAACT

                           *                *                   *            
       1920 TTTTTAGGGGGGCCGGAATTAAATTGTATATTTTTACGATAGTAAAAATGCATTTTCACCATTTT
          1 TTTTTAGGGGGGCCGAAATTAAATTGTATATTCTTACGATAGTAAAAATGCAATTTCACCATTTT

                       *               * *                   
       1985 AATATCTATATTTTTATAATTTTTAAAGGTTTAAATCAAAATTTTATCA
         66 AATATCTATATCTTTATAATTTTTAAAAGATTAAATCAAAATTTTATCA

                                                                             
       2034 TTTTTAGGGGGGCC-AATATTAAATTGTATATTCTTACGATAGTAAAAATGCAATTTCACCATTT
          1 TTTTTAGGGGGGCCGAA-ATTAAATTGTATATTCTTACGATAGTAAAAATGCAATTTCACCATTT

                      *       *                  *   *        
       2098 TAATATCTATCTCTTTATGATTTTTAAAAGATTAAATTAAATTTTTATCA
         65 TAATATCTATATCTTTATAATTTTTAAAAGATTAAATCAAAATTTTATCA

                   
       2148 TTTTTAG
          1 TTTTTAG

       2155 CGGGCGGGGG


Statistics
Matches: 110,  Mismatches: 10, Indels: 2
        0.90            0.08        0.02

Matches are distributed among these distances:
 113    1  0.01
 114  109  0.99

ACGTcount: A:0.34, C:0.09, G:0.11, T:0.45


Consensus pattern (114 bp):   
TTTTTAGGGGGGCCGAAATTAAATTGTATATTCTTACGATAGTAAAAATGCAATTTCACCATTTT
AATATCTATATCTTTATAATTTTTAAAAGATTAAATCAAAATTTTATCA
Done.