Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02500.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2254
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.33


Found at i:127 original size:2 final size:2

Alignment explanation


    Indices: 120--152  Score: 57
    Period size: 2  Copynumber: 16.5  Consensus size: 2

        110 TCTGCTTTGA

                                       *                     
        120 TC TC TC TC TC TC TC TC TC CC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

        153 TTAAAGGTTT


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48


Consensus pattern (2 bp):   
TC

Done.