Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02509.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2306
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26


Found at i:1345 original size:12 final size:12

Alignment explanation


    Indices: 1328--1353  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1318 GAATTTGGAT

                        
       1328 GAGGATGAGGAA
          1 GAGGATGAGGAA

                        
       1340 GAGGATGAGGAA
          1 GAGGATGAGGAA

              
       1352 GA
          1 GA

       1354 TCCTTTGAGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.42, C:0.00, G:0.50, T:0.08


Consensus pattern (12 bp):   
GAGGATGAGGAA
Done.