Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02510.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3194
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34


Found at i:910 original size:49 final size:47

Alignment explanation


    Indices: 838--932  Score: 127
    Period size: 49  Copynumber: 2.0  Consensus size: 47

        828 TGTATGGTAG

                          *   *       *      *               
        838 TTGTTATAATTAGTTATTTCATTACTTTCTTTTTACAGATTATTCTTTA
          1 TTGTTATAATTAGTAATTCCATTAC-AT-TTTTCACAGATTATTCTTTA

                                            *             
        887 TTGTTATAATTAGTAATTCCATTACATTTTTCCCAGATTATTCTTT
          1 TTGTTATAATTAGTAATTCCATTACATTTTTCACAGATTATTCTTT

        933 CATATAGATT


Statistics
Matches: 41,  Mismatches: 5, Indels: 2
        0.85            0.10        0.04

Matches are distributed among these distances:
  47   17  0.41
  48    1  0.02
  49   23  0.56

ACGTcount: A:0.25, C:0.13, G:0.06, T:0.56


Consensus pattern (47 bp):   
TTGTTATAATTAGTAATTCCATTACATTTTTCACAGATTATTCTTTA
Done.