Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02514.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2764
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34


Found at i:32 original size:6 final size:6

Alignment explanation


    Indices: 9--55  Score: 60
    Period size: 6  Copynumber: 7.7  Consensus size: 6

          1 GGAAAACG

                                 *                                 
          9 CCTTCTC CCATTCC CCTTCT CCTTCC CCTTCC CCTT-C CCTTCC CCTT
          1 CCTTC-C CC-TTCC CCTTCC CCTTCC CCTTCC CCTTCC CCTTCC CCTT

         56 GCAAATCAGT


Statistics
Matches: 36,  Mismatches: 2, Indels: 5
        0.84            0.05        0.12

Matches are distributed among these distances:
   5    5  0.14
   6   23  0.64
   7    5  0.14
   8    3  0.08

ACGTcount: A:0.02, C:0.60, G:0.00, T:0.38


Consensus pattern (6 bp):   
CCTTCC

Found at i:51 original size:17 final size:18

Alignment explanation


    Indices: 9--55  Score: 69
    Period size: 17  Copynumber: 2.6  Consensus size: 18

          1 GGAAAACG

                                
          9 CCTTCTCCCATTCCCCTTCT
          1 CCTTC-CCC-TTCCCCTTCT

                              
         29 CCTTCCCCTTCCCCTTC-
          1 CCTTCCCCTTCCCCTTCT

                      
         46 CCTTCCCCTT
          1 CCTTCCCCTT

         56 GCAAATCAGT


Statistics
Matches: 27,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  17   10  0.37
  18    9  0.33
  19    3  0.11
  20    5  0.19

ACGTcount: A:0.02, C:0.60, G:0.00, T:0.38


Consensus pattern (18 bp):   
CCTTCCCCTTCCCCTTCT
Done.