Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02520.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 323

Length: 539
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35


Found at i:310 original size:18 final size:18

Alignment explanation


    Indices: 287--324  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        277 CGTCACCACT

                              
        287 CTATGTTTACTCTAGCAC
          1 CTATGTTTACTCTAGCAC

                              
        305 CTATGTTTACTCTAGCAC
          1 CTATGTTTACTCTAGCAC

              
        323 CT
          1 CT

        325 TTGGGAGTCC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.21, C:0.29, G:0.11, T:0.39


Consensus pattern (18 bp):   
CTATGTTTACTCTAGCAC
Done.