Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02535.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 769

Length: 1283
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28


Found at i:975 original size:6 final size:6

Alignment explanation


    Indices: 964--993  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

        954 AGTCCAAGTG

                                              
        964 GGAGCA GGAGCA GGAGCA GGAGCA GGAGCA
          1 GGAGCA GGAGCA GGAGCA GGAGCA GGAGCA

        994 AGAGTGTATC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.33, C:0.17, G:0.50, T:0.00


Consensus pattern (6 bp):   
GGAGCA

Done.