Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02535.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1871
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31


Found at i:1563 original size:6 final size:6

Alignment explanation


    Indices: 1552--1581  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

       1542 AGTCCAAGTG

                                              
       1552 GGAGCA GGAGCA GGAGCA GGAGCA GGAGCA
          1 GGAGCA GGAGCA GGAGCA GGAGCA GGAGCA

       1582 AGAGTGTATC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.33, C:0.17, G:0.50, T:0.00


Consensus pattern (6 bp):   
GGAGCA

Done.