Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02537.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2972
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:540 original size:3 final size:3

Alignment explanation


    Indices: 532--576  Score: 90
    Period size: 3  Copynumber: 15.0  Consensus size: 3

        522 CACCCATCTC

                                                                       
        532 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
          1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT

        577 GTTGTCTTCT


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   42  1.00

ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67


Consensus pattern (3 bp):   
TCT

Found at i:1414 original size:17 final size:18

Alignment explanation


    Indices: 1388--1422  Score: 54
    Period size: 17  Copynumber: 2.0  Consensus size: 18

       1378 TGTCTCTGTA

                              
       1388 TTTTAATTTTTA-ATTTT
          1 TTTTAATTTTTAGATTTT

                 *            
       1405 TTTTATTTTTTAGATTTT
          1 TTTTAATTTTTAGATTTT

       1423 AATATTATGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17   11  0.69
  18    5  0.31

ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77


Consensus pattern (18 bp):   
TTTTAATTTTTAGATTTT
Done.