Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02540.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1806
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28


Found at i:23 original size:7 final size:7

Alignment explanation


    Indices: 11--52  Score: 75
    Period size: 7  Copynumber: 6.0  Consensus size: 7

          1 AAGACTAAAT

                   
         11 GCAAAGG
          1 GCAAAGG

                   
         18 GCAAAGG
          1 GCAAAGG

                   
         25 GCAAAGG
          1 GCAAAGG

                   
         32 GCAAAGG
          1 GCAAAGG

                   
         39 GCAAAGG
          1 GCAAAGG

             *     
         46 GAAAAGG
          1 GCAAAGG

         53 CGACAAGGAG


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   7   34  1.00

ACGTcount: A:0.45, C:0.12, G:0.43, T:0.00


Consensus pattern (7 bp):   
GCAAAGG

Done.