Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02542.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2175
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27


Found at i:425 original size:3 final size:3

Alignment explanation


    Indices: 417--474  Score: 109
    Period size: 3  Copynumber: 19.7  Consensus size: 3

        407 GTGTTAAAGT

                                                                           
        417 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
          1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA

                          
        465 AGA AG- AGA AG
          1 AGA AGA AGA AG

        475 GAAAGTAGGA


Statistics
Matches: 54,  Mismatches: 0, Indels: 2
        0.96            0.00        0.04

Matches are distributed among these distances:
   2    2  0.04
   3   52  0.96

ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00


Consensus pattern (3 bp):   
AGA

Done.