Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02557.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3175
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33


Found at i:1944 original size:5 final size:5

Alignment explanation


    Indices: 1934--1966  Score: 66
    Period size: 5  Copynumber: 6.6  Consensus size: 5

       1924 ATAAGCACAC

                                                   
       1934 CACCT CACCT CACCT CACCT CACCT CACCT CAC
          1 CACCT CACCT CACCT CACCT CACCT CACCT CAC

       1967 TTCAGTGGAC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   28  1.00

ACGTcount: A:0.21, C:0.61, G:0.00, T:0.18


Consensus pattern (5 bp):   
CACCT

Done.