Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02563.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 831

Length: 1386
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31


Found at i:87 original size:20 final size:20

Alignment explanation


    Indices: 64--109  Score: 65
    Period size: 20  Copynumber: 2.2  Consensus size: 20

         54 TTTCTTTTTA

                                 
         64 TTTTCTTTCTCATCTTTCTCT
          1 TTTTCTTT-TCATCTTTCTCT

                      *     *   
         85 TTTTCTTTTCTTCTTTTTCT
          1 TTTTCTTTTCATCTTTCTCT

                 
        105 TTTTC
          1 TTTTC

        110 CTACCCTAAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  20   15  0.65
  21    8  0.35

ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74


Consensus pattern (20 bp):   
TTTTCTTTTCATCTTTCTCT

Found at i:101 original size:14 final size:13

Alignment explanation


    Indices: 78--107  Score: 51
    Period size: 14  Copynumber: 2.2  Consensus size: 13

         68 CTTTCTCATC

                         
         78 TTTCTCTTTTTCT
          1 TTTCTCTTTTTCT

                          
         91 TTTCTTCTTTTTCT
          1 TTTC-TCTTTTTCT

               
        105 TTT
          1 TTT

        108 TCCTACCCTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    4  0.25
  14   12  0.75

ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80


Consensus pattern (13 bp):   
TTTCTCTTTTTCT
Done.