Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02564.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 834
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31


Found at i:681 original size:2 final size:2

Alignment explanation


    Indices: 674--723  Score: 82
    Period size: 2  Copynumber: 25.0  Consensus size: 2

        664 ATCCTATAAC

                        *                                   *             
        674 CT CT CT CT TT CT CT CT CT CT CT CT CT CT CT CT TT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

                       
        716 CT CT CT CT
          1 CT CT CT CT

        724 ATATATATAT


Statistics
Matches: 44,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   2   44  1.00

ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54


Consensus pattern (2 bp):   
CT

Done.