Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02589.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 409

Length: 683
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28


Found at i:655 original size:14 final size:14

Alignment explanation


    Indices: 636--666  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

        626 TGTGATTAAT

                          
        636 GTGTAAGTAGCTTA
          1 GTGTAAGTAGCTTA

                          
        650 GTGTAAGTAGCTTA
          1 GTGTAAGTAGCTTA

               
        664 GTG
          1 GTG

        667 GTTAGGCAGA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.26, C:0.06, G:0.32, T:0.35


Consensus pattern (14 bp):   
GTGTAAGTAGCTTA
Done.