Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02596.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6539
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25


Found at i:656 original size:35 final size:35

Alignment explanation


    Indices: 610--679  Score: 140
    Period size: 35  Copynumber: 2.0  Consensus size: 35

        600 GGAAAGTAGA

                                               
        610 GCGCACACCGTTCCATATGTTTTCTAAAACATTCT
          1 GCGCACACCGTTCCATATGTTTTCTAAAACATTCT

                                               
        645 GCGCACACCGTTCCATATGTTTTCTAAAACATTCT
          1 GCGCACACCGTTCCATATGTTTTCTAAAACATTCT

        680 CCCCGTTAGA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   35  1.00

ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34


Consensus pattern (35 bp):   
GCGCACACCGTTCCATATGTTTTCTAAAACATTCT
Done.