Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00384.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5565
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30


Found at i:45 original size:5 final size:5

Alignment explanation


    Indices: 35--72  Score: 58
    Period size: 5  Copynumber: 7.6  Consensus size: 5

         25 CTTTCACTGT

                                          *      *       
         35 TCTTC TCTTC TCTTC TCTTC TCTTC GCTTC TTTTC TCT
          1 TCTTC TCTTC TCTTC TCTTC TCTTC TCTTC TCTTC TCT

         73 GCAACCAAGT


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   5   29  1.00

ACGTcount: A:0.00, C:0.37, G:0.03, T:0.61


Consensus pattern (5 bp):   
TCTTC

Done.