Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02617.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1920
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32


Found at i:1772 original size:24 final size:24

Alignment explanation


    Indices: 1745--1793  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1735 TTGATTACCG

                                    
       1745 TATGTGGACTACCATTTGACTTGT
          1 TATGTGGACTACCATTTGACTTGT

                                    
       1769 TATGTGGACTACCATTTGACTTGT
          1 TATGTGGACTACCATTTGACTTGT

             
       1793 T
          1 T

       1794 TTTTTATCTA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.20, C:0.16, G:0.20, T:0.43


Consensus pattern (24 bp):   
TATGTGGACTACCATTTGACTTGT
Done.