Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02629.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1854
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28


Found at i:1788 original size:13 final size:13

Alignment explanation


    Indices: 1770--1794  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       1760 ATACCCCTAA

                         
       1770 CCTGTATCTGTTT
          1 CCTGTATCTGTTT

                        
       1783 CCTGTATCTGTT
          1 CCTGTATCTGTT

       1795 GTCAGAACAG


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.08, C:0.24, G:0.16, T:0.52


Consensus pattern (13 bp):   
CCTGTATCTGTTT
Done.