Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga11g02642.F3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3320
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Found at i:1590 original size:162 final size:162
Alignment explanation
Indices: 1323--1643 Score: 545
Period size: 162 Copynumber: 2.0 Consensus size: 162
1313 GTAGGAAGAT
* *
1323 CTGCAAAGCTAGATGGTACTGTCAATGGTGGTTCATTGTTGCCCCGGAAAAGGAAAACTGCGAAG
1 CTGCAAAGCTAGATGGTACTGTCAATGGTGGTTCATTGTTGCCCCGAAAAAGGAAAACTGAGAAG
*
1388 AAAAGTTCTAAAATTGATCCACATCAGGTCTGTTTTCCTGAAGAAAACACTGCAGATGAGATTAA
66 AAAAGTTCTAAAATTGATCCACATCAGGTCTGTTTTCCTGAAGAAAACAATGCAGATGAGATTAA
*
1453 GCAAACGACATATAGGACTGAAACTCCACCGC
131 GCAAACAACATATAGGACTGAAACTCCACCGC
* * *
1485 CTGCAAAGCTAGCTGGTACTGTCAATGGTGGTTCGTTGTTGCCCCAGAAAAAGG-GAACTGAGAA
1 CTGCAAAGCTAGATGGTACTGTCAATGGTGGTTCATTGTTGCCCC-GAAAAAGGAAAACTGAGAA
*
1549 GAAAAGTTCTAAAATTGATCCACATCAGTTCTGTTTTCCTGAAGAAAACAATGCAGATGAGATTA
65 GAAAAGTTCTAAAATTGATCCACATCAGGTCTGTTTTCCTGAAGAAAACAATGCAGATGAGATTA
*
1614 AGCAAACAACATATAGGAGTGAAACTCCAC
130 AGCAAACAACATATAGGACTGAAACTCCAC
1644 TTCCTTCAGA
Statistics
Matches: 149, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
162 142 0.95
163 7 0.05
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.23
Consensus pattern (162 bp):
CTGCAAAGCTAGATGGTACTGTCAATGGTGGTTCATTGTTGCCCCGAAAAAGGAAAACTGAGAAG
AAAAGTTCTAAAATTGATCCACATCAGGTCTGTTTTCCTGAAGAAAACAATGCAGATGAGATTAA
GCAAACAACATATAGGACTGAAACTCCACCGC
Done.