Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02663.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2102
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32


Found at i:130 original size:20 final size:20

Alignment explanation


    Indices: 94--131  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

         84 TTTTTTTAGA

                        *       
         94 TTCAGCTTCTTTTTTTCAGT
          1 TTCAGCTTCTTTCTTTCAGT

                               
        114 TTCAGCCTT-TTTCTTTCA
          1 TTCAG-CTTCTTTCTTTCA

        132 ACAACTTTTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 2
        0.84            0.05        0.11

Matches are distributed among these distances:
  20   13  0.81
  21    3  0.19

ACGTcount: A:0.11, C:0.24, G:0.08, T:0.58


Consensus pattern (20 bp):   
TTCAGCTTCTTTCTTTCAGT
Done.