Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02684.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1997
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27


Found at i:1642 original size:19 final size:19

Alignment explanation


    Indices: 1605--1643  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       1595 AGCAGACCAG

                       *  *    
       1605 GAAAAAAAAGGTAAGAAGA
          1 GAAAAAAAAGGAAAAAAGA

                     *         
       1624 GAAAAAAAATGAAAAAAGA
          1 GAAAAAAAAGGAAAAAAGA

             
       1643 G
          1 G

       1644 GGGTCCATTC


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.72, C:0.00, G:0.23, T:0.05


Consensus pattern (19 bp):   
GAAAAAAAAGGAAAAAAGA
Done.