Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02686.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 601

Length: 1002
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.38


Found at i:451 original size:14 final size:14

Alignment explanation


    Indices: 432--458  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

        422 TTGGTAACCT

                          
        432 GTAAAAGCTTTTCC
          1 GTAAAAGCTTTTCC

                         
        446 GTAAAAGCTTTTC
          1 GTAAAAGCTTTTC

        459 AAGCTTTTCT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37


Consensus pattern (14 bp):   
GTAAAAGCTTTTCC

Found at i:621 original size:6 final size:6

Alignment explanation


    Indices: 610--635  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

        600 CTTCTCCCAT

                                          
        610 TTCCCC TTCCCC TTCCCC TTCCCC TT
          1 TTCCCC TTCCCC TTCCCC TTCCCC TT

        636 GGGTTGCAAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38


Consensus pattern (6 bp):   
TTCCCC

Done.