Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02695.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3390
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29


Found at i:2179 original size:3 final size:3

Alignment explanation


    Indices: 2171--2208  Score: 67
    Period size: 3  Copynumber: 12.7  Consensus size: 3

       2161 GTCTTTTCAT

                                         *                    
       2171 TTA TTA TTA TTA TTA TTA TTA TGA TTA TTA TTA TTA TT
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT

       2209 GGTCTTCTAC


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66


Consensus pattern (3 bp):   
TTA

Done.