Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02703.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2818
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30


Found at i:2471 original size:13 final size:14

Alignment explanation


    Indices: 2448--2476  Score: 51
    Period size: 13  Copynumber: 2.1  Consensus size: 14

       2438 GCGGCTCTGC

                          
       2448 TTTTTCTTTTTCTT
          1 TTTTTCTTTTTCTT

                          
       2462 TTTTTC-TTTTCTT
          1 TTTTTCTTTTTCTT

              
       2475 TT
          1 TT

       2477 GTTCATATTA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    9  0.60
  14    6  0.40

ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86


Consensus pattern (14 bp):   
TTTTTCTTTTTCTT
Done.