Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00398.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1837
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31


Found at i:1369 original size:25 final size:25

Alignment explanation


    Indices: 1335--1384  Score: 91
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1325 GAGGGGCTGG

                                     
       1335 TGACTTTCGGAATAAGTACTATATT
          1 TGACTTTCGGAATAAGTACTATATT

                       *             
       1360 TGACTTTCGGAGTAAGTACTATATT
          1 TGACTTTCGGAATAAGTACTATATT

       1385 AGTATAGTTC


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40


Consensus pattern (25 bp):   
TGACTTTCGGAATAAGTACTATATT
Done.