Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02735.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2364
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32


Found at i:566 original size:34 final size:34

Alignment explanation


    Indices: 528--594  Score: 98
    Period size: 34  Copynumber: 2.0  Consensus size: 34

        518 AGGGGCCTTA

                           *   *    *         
        528 CTGGTTGATAGTGAGTTGTTAGGATTATGGGTTG
          1 CTGGTTGATAGTGAGCTGTGAGGAGTATGGGTTG

                     *                       
        562 CTGGTTGATGGTGAGCTGTGAGGAGTATGGGTT
          1 CTGGTTGATAGTGAGCTGTGAGGAGTATGGGTT

        595 AAATGGCAAT


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  34   29  1.00

ACGTcount: A:0.16, C:0.04, G:0.42, T:0.37


Consensus pattern (34 bp):   
CTGGTTGATAGTGAGCTGTGAGGAGTATGGGTTG
Done.