Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02735.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2253
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32


Found at i:455 original size:34 final size:34

Alignment explanation


    Indices: 417--483  Score: 98
    Period size: 34  Copynumber: 2.0  Consensus size: 34

        407 AGGGGCCTTA

                           *   *    *         
        417 CTGGTTGATAGTGAGTTGTTAGGATTATGGGTTG
          1 CTGGTTGATAGTGAGCTGTGAGGAGTATGGGTTG

                     *                       
        451 CTGGTTGATGGTGAGCTGTGAGGAGTATGGGTT
          1 CTGGTTGATAGTGAGCTGTGAGGAGTATGGGTT

        484 AAATGGCAAT


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  34   29  1.00

ACGTcount: A:0.16, C:0.04, G:0.42, T:0.37


Consensus pattern (34 bp):   
CTGGTTGATAGTGAGCTGTGAGGAGTATGGGTTG
Done.