Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02736.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2677
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.30


Found at i:2339 original size:24 final size:24

Alignment explanation


    Indices: 2307--2354  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       2297 TGATGACACT

                                    
       2307 TGTGCAAAAAATCACTTAGCTCCA
          1 TGTGCAAAAAATCACTTAGCTCCA

                                    
       2331 TGTGCAAAAAATCACTTAGCTCCA
          1 TGTGCAAAAAATCACTTAGCTCCA

       2355 CCTTCACAAG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25


Consensus pattern (24 bp):   
TGTGCAAAAAATCACTTAGCTCCA
Done.