Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02753.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5562
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31


Found at i:5513 original size:39 final size:39

Alignment explanation


    Indices: 5469--5546  Score: 147
    Period size: 39  Copynumber: 2.0  Consensus size: 39

       5459 AGTTTCAATC

                                                   
       5469 CTCACTAAACTATAATTGTTAAATTTTGTTATCTTCAAA
          1 CTCACTAAACTATAATTGTTAAATTTTGTTATCTTCAAA

                                            *      
       5508 CTCACTAAACTATAATTGTTAAATTTTGTTATTTTCAAA
          1 CTCACTAAACTATAATTGTTAAATTTTGTTATCTTCAAA

       5547 ATCAGATGTT


Statistics
Matches: 38,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  39   38  1.00

ACGTcount: A:0.36, C:0.14, G:0.05, T:0.45


Consensus pattern (39 bp):   
CTCACTAAACTATAATTGTTAAATTTTGTTATCTTCAAA
Done.