Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02766.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 902

Length: 1504
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32


Found at i:1296 original size:14 final size:14

Alignment explanation


    Indices: 1279--1305  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       1269 TGTCTTTCCT

                          
       1279 TTATTTTTTTTCAC
          1 TTATTTTTTTTCAC

                         
       1293 TTATTTTTTTTCA
          1 TTATTTTTTTTCA

       1306 GTATATAACT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.15, C:0.11, G:0.00, T:0.74


Consensus pattern (14 bp):   
TTATTTTTTTTCAC
Done.