Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00340.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2749
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.36


Found at i:557 original size:88 final size:88

Alignment explanation


    Indices: 423--600  Score: 356
    Period size: 88  Copynumber: 2.0  Consensus size: 88

        413 TGAAATGAAC

                                                                             
        423 TAGGAATTGATAAGTGGTATTATTGTTGTTGTTGAATTATGTATTAAGCTTTTTAGTTTTTGCAA
          1 TAGGAATTGATAAGTGGTATTATTGTTGTTGTTGAATTATGTATTAAGCTTTTTAGTTTTTGCAA

                                   
        488 TTTAGTCGAATTGCCCCTTTGTT
         66 TTTAGTCGAATTGCCCCTTTGTT

                                                                             
        511 TAGGAATTGATAAGTGGTATTATTGTTGTTGTTGAATTATGTATTAAGCTTTTTAGTTTTTGCAA
          1 TAGGAATTGATAAGTGGTATTATTGTTGTTGTTGAATTATGTATTAAGCTTTTTAGTTTTTGCAA

                                   
        576 TTTAGTCGAATTGCCCCTTTGTT
         66 TTTAGTCGAATTGCCCCTTTGTT

              
        599 TA
          1 TA

        601 CTTCTATGCT


Statistics
Matches: 90,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  88   90  1.00

ACGTcount: A:0.23, C:0.08, G:0.20, T:0.49


Consensus pattern (88 bp):   
TAGGAATTGATAAGTGGTATTATTGTTGTTGTTGAATTATGTATTAAGCTTTTTAGTTTTTGCAA
TTTAGTCGAATTGCCCCTTTGTT
Done.