Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00409.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2127
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Found at i:140 original size:31 final size:31

Alignment explanation


    Indices: 102--160  Score: 91
    Period size: 31  Copynumber: 1.9  Consensus size: 31

         92 AAAAAAAATT

                              *            
        102 TTAAACTCAAACACCCAGTTTTTGTTTTGAA
          1 TTAAACTCAAACACCCAGATTTTGTTTTGAA

                    *  *                
        133 TTAAACTCGAAGACCCAGATTTTGTTTT
          1 TTAAACTCAAACACCCAGATTTTGTTTT

        161 TGTGTTTTTG


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  31   25  1.00

ACGTcount: A:0.31, C:0.19, G:0.12, T:0.39


Consensus pattern (31 bp):   
TTAAACTCAAACACCCAGATTTTGTTTTGAA
Done.