Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g02775.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 537

Length: 896
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37


Found at i:609 original size:2 final size:2

Alignment explanation


    Indices: 602--630  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

        592 TTGCTTTGTT

                                                       
        602 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

        631 TTTCTATTAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (2 bp):   
TC

Found at i:670 original size:16 final size:17

Alignment explanation


    Indices: 639--671  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        629 CTTTTCTATT

                *            
        639 ATTTTCCCCTTAATTGA
          1 ATTTGCCCCTTAATTGA

                             
        656 ATTTGCCCC-TAATTGA
          1 ATTTGCCCCTTAATTGA

        672 GGACTTTTTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  16    7  0.47
  17    8  0.53

ACGTcount: A:0.24, C:0.24, G:0.09, T:0.42


Consensus pattern (17 bp):   
ATTTGCCCCTTAATTGA
Done.